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Abstract Maple syrup urine disease (MSUD, OMIM #248600) is an autosomal inborn disorder, triggered by a mutation in BCKDHA, BCKDHB and DBT genes that encoding E1α, E1β and E2 of branched chain ketoacid dehydrogenase (BCKDH) complex. This multi-enzyme complex involves in the metabolism of branched chain amino acids (BCAAs): leucine, isoleucine and valine via the oxidative decaboylation. The deficiency of BCKDH causes the accumulation of BCAAs and their crossponding α- ketoacids in the blood leading to brain encephalopathy. The worldwide incidence of MSUD is estimated 1:185000 and the rate elevated in population characterized by consanguineous marriage, but the incidence in Egyptain population has not yet been reported. The MSUD genotype is determined according to the affected loci: type IA for the BCKDHA gene (E1α subunit); type IB for the BCKDHB gene (E1β subunit) and type II for the DBT gene (E2 subunit). MSUD patients are categorized based on the severity of symptoms into classic form which represents 75% of patients and is considred the most severe phenotype and the less severe variant phenotypes: intermediate, intermittent and thiamine responsive. MS/MS is widely used in neonatal screening in many countries such as India, China, Turkey, Iran, Lebanon, Spain, Portugal and Isreal which enables MSUD diagnosis. The results of biochemical testing using MS/MS provide the concentration of BCAAs in the blood but it do not introduce which gene has been affected. In this present study, RNA was extracted from the whole blood from twenty patients (10 males & 10 females) who were shown an elevation in blood BCAAs concentration by LC/MS/MS screening. The cDNA was synthesized to amplify the entire BCKDHB and DBT coding regions by conventional PCR and amplification products were sequenced. Finally, the pathogenicity of nucleotide alteration and their effect in protein function were examined using in silico analysis tools. The mutational identification of twenty MSUD Egyptian patients showed tweleve mutations (eight novel & four previously published) in homozygous state in the coding region of two genes. The mutations spanned across BCKDHB coding region were found in exons 3, 4, 7, 8, 9, 10. The novel mutations (4/12), missense mutations: c.388G>T/p.V130F (exon 4), c.806G>A/p.G269E (exon 7), c.995C>T / p.P332L (exon 9),c.1091A>G/p.D364G (exon 10), deletion mutation (1/12): c.288_288delA/ D97Mfs*133 (exon 3), insertion mutation: (1/12) c.908_909insA/ p.D303Efs*15 (exon 8) in addition to nonsense reported mutations (2/12): c.853C>T/p.R285X (exon 8) & c.970C>T/p.R324X (exon 9) while DBT mutations were identified in exons 1, 3, 6, 9 as follows: the novel mutations (2/12), deletion mutation (1/12): c.241_242delGT/p.V81X (exon 3) and nonsense mutations (1/12): c.30G>A, p.W10X (exon 1), in beside two reported nonsense mutations (2/12): c.1291C>T, p.R431X (exon 9) & c.670G>A, p.E224K (exon 6). The novel missense mutations of BCKDHB gene were predicted to cause MSUD and had a local structural effect on E1B subunit while the pathogenicity of nonsense mutations in both BCKDHB and DBT genes returned to the production of truncated E1B and E2 subunits. |